Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MELNKFVGNKIKQYREERGLNQEALAEKLHTTRQTISRYENGDRKANQDVLFELAKIFNKRLDDFFPERNLPPVDERLVTIAAHIDDDVTEEEMRDILAYIEMKKKLHRGM
2LYJ Chain:A ((1-61))
-----MIINNLKLIREKKKISQSELAALLEVSRQTINGIEKNKYNPSLQLALKIAYYLNTPLEDIF---------------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
2LYJ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -20401 for 437 contacts (-46.7/contact) +
2D Compatibility (PS) -6856 + (NN) -3209 + (LL) 4072
1D Compatibility (HY) -6400 + (ID) 900
Total energy: -33694.0 ( -77.10 by residue)
QMean score : 0.647
(partial model without unconserved sides chains):
PDB file :
Tito_2LYJ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2LYJ-query.scw
PDB file :
Tito_Scwrl_2LYJ.pdb
: