Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | VKVNKFFKKTTHVLLVAGLTIGLTAPFTGTTAQAAA----DTVPIQILGINDFHGALETASKDASGSPIGGADYLATN--LDNATNSFLQANPGATTDNAIRVQAGDMVGASPAVSGLLQDEPTMKVLQKMNFEVGTLGNHEFDEGLPEYKRILDGVSTNKFGPIVEAYPRVKSDMKIVAANVVNKGTNTVAEGFLPYYVKEIDGVKVGFIGIVTTEIPNLVLANHIKDYDFL---DEAETIVKYSAELRG-QGVNAIVVLSHVPALSTGNPNTGTKQDVAGEAANMMTKANELDPNNSVDLVLAGHNHQ-------------YTNGLVGK------TRIVQSYNNGKA-----FSDVTGELDKTTGDFVSP-PDAKITYN----TRSVTPNADITAVTE----DAKSRIEGVINETIGLANKDVISRDTNPDNKAIDDKESELGNMITDAQRYMANKAGADVDFAMTNNGGIRSDLTTRLANGQNEITWGAAQAVQPFGNILQVVEMTGADILEALN--QQYLSNQTYFLQISGLKYTFTDTDDLDHAYKVASVTTEDGTPLKTDQKYKVVINDFLFGGGDGFSAF-KKANLVTAIDPDTETFINYIKDQKAAGKVITAQKEGRKVYKSQAEIDKETKDAAIKAIKEATKINKLAEKDKTLTGTTLPGATVSVQKATANARMALAAGPNATADANGKFSVDVTSLNLKKGDQITTTITDPNGYSTTFQATVQAAATTPPDNGNGGTDNGNGNGNNGGTDGNGGTNNGNGSGTNGGTTTTEDPTTTTSNTSTTGTSSNTSLPTTGDTAGLATVFGVILTTTALYVLRKRS |
| 1USH Chain:A ((26-531)) | ------------------------------------YEQDKTYKITVLHTNDHHGHFWRNEYGEYG--------LAAQKTLVDGIRKEVAAEGGSV----LLLSGGDINTGVPE-SDLQDAEPDFRGMNLVGYDAMAIGNHEFDNPLTVLRQ------QEKW-----------AKFPLLSANIYQKSTGERL--FKPWALFKRQDLKIAVIGLTTDDTAKIGNPEYFTDIEFRKPADEAKLVIQ---ELQQTEKPDIIIAATHMGHYDNGEHGSNAPGDV--EMARAL-------PAGSLAMIVGGHSQDPVCMAAENKKQVDYVPGTPCKPDQQNGIWIVQAHEWGKYVGRADFEFRNGEMKMVNYQLIPVNLKK-----RVLYTPEIAENQQMISLLSPFQNKGKAQLEVKIGETNGRLEGD---RDK------VRFVQTNMGRLILAAQ---MDRTGAD--FAVMSGGGIRDSIEA------GDISYKNVLKVQPFGNVVVYADMTGKEVIDYLTAVAQMKPDSGAYPQFANVSFVAKDGKLNDLKIK--------GEPVDPAKTYRMATLNFNATGGDGYPRLDNKPGYVNTGFIDAEVLKAYIQ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 1USH.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -107715 for 3912 contacts (-27.5/contact) +
2D Compatibility (PS) -49266 + (NN) -21828 + (LL) 13164
1D Compatibility (HY) -24000 + (ID) 6050
Total energy: -195695.0 ( -50.02 by residue)
QMean score : 0.445
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