Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MDEETLLERGYRKYRGADVDIYFNTNVCEHSG-----NCVKGNVELFN-LDRK-P-WIMPDNVSKEEAKRVIHTCPSGALQYIEK
1JNR Chain:B ((2-65))
-------------------PSFVNPEKCDGCKALERTACEYICPNDLMTLDKEKMKAYNREPDMCWECYSCVKMCPQGAIDVR--
General information:
TITO was launched using:
RESULT:
Template:
1JNR.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -19521 for 362 contacts (-53.9/contact) +
2D Compatibility (PS) -5878 + (NN) -1372 + (LL) 1480
1D Compatibility (HY) -1200 + (ID) 500
Total energy: -26991.0 ( -74.56 by residue)
QMean score : 0.292
(partial model without unconserved sides chains):
PDB file :
Tito_1JNR.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1JNR-query.scw
PDB file :
Tito_Scwrl_1JNR.pdb
: