Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MDAKSQQAEAQLQLLKKEQSAAKDFLQDLQRQQNEQEWLAEDVARVHQEER-------ESLELLREVWQGAESRSFGYYLADLQEEEKQKWHKKIQANEEECQQKITACRKNIYQLENQQQDLQKELLQ
4AG0 Chain:B ((195-258))
-----------VQFIKIDGS----FVQDLNQVEN-QEILKGLIAELHEQQKLSIVPFVESASVLATLWQAGATYIQGYYL-------------------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
4AG0.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) 4309 for 310 contacts (13.9/contact) +
2D Compatibility (PS) -6096 + (NN) -1369 + (LL) 6132
1D Compatibility (HY) -6000 + (ID) 1100
Total energy: -4124.0 ( -13.30 by residue)
QMean score : 0.369
(partial model without unconserved sides chains):
PDB file :
Tito_4AG0.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4AG0-query.scw
PDB file :
Tito_Scwrl_4AG0.pdb
: