Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MATTLEVQKRETTQHSEVTRLRSEGKVPGIIYGYKSENVPVSVDSLELIKAVRDNGRNAVFSVTVDG-KKLNVLLHEYQVDPLKDVLVHVDLLAVDMNEEVETDVRVVLVGDAPGVKAGGVLQQIIHDVKVSA-TPEKLPETIELDISSLEIGDVLTTNDLPENKDYVVQAEEEETVVTVSAPRAEEEPTTTEAPEPEAVHGKDEEPVE
3PIO Chain:S ((16-175))
-----------------------ESMIAAVAYN-KENNVSFALDRKAFDRAFRQQSTTGLFDITVEGGETFPALVKAVQMDKRKRAPIHVDFYMVTYGEPVEVSVPVHTTGRSQGEVQGGLVDIVVHNLQIVAPGPRRIPQELVVDVTKMNIGDHITAGDIKLPEGCTLAADPELTVVSVLPPR-------------------------
General information:
TITO was launched using:
RESULT:
Template:
3PIO.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -79452 for 1032 contacts (-77.0/contact) +
2D Compatibility (PS) -17543 + (NN) -9037 + (LL) 3552
1D Compatibility (HY) -12800 + (ID) 2350
Total energy: -117630.0 ( -113.98 by residue)
QMean score : 0.408
(partial model without unconserved sides chains):
PDB file :
Tito_3PIO.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3PIO-query.scw
PDB file :
Tito_Scwrl_3PIO.pdb
: