Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MLDKSVPHISVIMVNHDATNYPEFHLPAGYSFCFYKDGLEEDWCRLQLETGQVLSMDSIRARFETEFGNEKEKLTKRCIFVKAPNGEIIGTAMLWDGNTFGKIESRIHWVAVLDSHGGKGIAKALLSK-------ILGLNKSKFVYLTTQTGSYQAIYLYRKFGFEKYVGKTPENWKTVNFQEEKETAWQIIENKIAEHQA
4JJX Chain:A ((57-142))
--------------------------------------------------------------------------AERRFVVEDAQKNLIGLVELIEINYIHR--SAEFQIIIAPEHQGKGFARTLINRALDYSFTILNLHK---IYLHVAVENPKAVHLYEECGF------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
4JJX.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -37428 for 445 contacts (-84.1/contact) +
2D Compatibility (PS) -9164 + (NN) -5960 + (LL) 8416
1D Compatibility (HY) -6800 + (ID) 1200
Total energy: -52136.0 ( -117.16 by residue)
QMean score : 0.480
(partial model without unconserved sides chains):
PDB file :
Tito_4JJX.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4JJX-query.scw
PDB file :
Tito_Scwrl_4JJX.pdb
: