Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MILVIDVGNTNCTVGVYEKQKLLKHWRMTTDRHRTSDELGMTVLNFFSYANLTPSDIQGIIISSVVPPIMHAMETMCVRYFNIRPLIVGPGIKTGLNLKVDNPREIGSDRIVNAVAASEEY-GTPVIVVDFGTATTFCYIDESGVYQGGAIAPGIMISTEALYNRAAKLPRVDIAESSQIIGKSTVSSMQAGIFYGFVGQCEGIIAEMKKQS-NASPV-VVATGGLARMITEKSSAVDILDPFLTLKGLELLYRRNKPTTEK
3DJC Chain:H ((3-251))
LILCIDVGNSHIYGGVFDGDEIKLRFRHTS-KVSTSDELGIFLKSVLRENNCSPETIRKIAICSVVPQVDYSLRSACVKYFSIDPFLLQAGVKTGLNIKYRNPVEVGADRIANAIAATHSFPNQNIIVIDFGTATTFCAISHKKAYLGGAILPGLRLSADALSKNTAKLPSVEIIKTESVVGRSTIESIQSGVYYGVLGACKELIQRIHHEAFNGDQILILATGGFASLF-DKQGLYDHLVPDLVLQGIRL-----------
General information:
TITO was launched using:
RESULT:
Template:
3DJC.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -206032 for 1946 contacts (-105.9/contact) +
2D Compatibility (PS) -26225 + (NN) -8955 + (LL) 560
1D Compatibility (HY) -26400 + (ID) 5150
Total energy: -272202.0 ( -139.88 by residue)
QMean score : 0.599
(partial model without unconserved sides chains):
PDB file :
Tito_3DJC.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3DJC-query.scw
PDB file :
Tito_Scwrl_3DJC.pdb
: