Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
LDKIYLNELVFYGYHGVLKEETKLGQTFRVSLILGLSTKKAGISDSVEDTVSYADVYETVKEIVEGKPFKLIEALAEKIASEVLTGYPLLEEVTVKLIKPNPPIPGHYDSVAVEIERKRSDLNG
1NBU Chain:C ((3-119))
-DRIELRGLTVHGRHGVAAHERVAGQRFVIDVTVWIDLAEAANSDDLADTYDYVRLASRAAEIVAGPPRKLIETVGAEIADHVMDDQ-RVHAVEVAVHKPQAPIPQTFDDVAVVIRRSR-----
General information:
TITO was launched using:
RESULT:
Template:
1NBU.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -65177 for 835 contacts (-78.1/contact) +
2D Compatibility (PS) -12852 + (NN) -6921 + (LL) -144
1D Compatibility (HY) -6800 + (ID) 2200
Total energy: -94094.0 ( -112.69 by residue)
QMean score : 0.554
(partial model without unconserved sides chains):
PDB file :
Tito_1NBU.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1NBU-query.scw
PDB file :
Tito_Scwrl_1NBU.pdb
: