Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSAIAKFFRNVSSEMHKVTWPTRKELLTYTVTVVITVVLFALFFMLIDFGIEQIIKLIV
2ZJS Chain:E ((12-57))
----------ARAELARVTWPTREQVVEGTQAILLFTLAFMVILGLYDTVFRFLIG---
General information:
TITO was launched using:
RESULT:
Template:
2ZJS.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -12980 for 168 contacts (-77.3/contact) +
2D Compatibility (PS) -4499 + (NN) -466 + (LL) 1592
1D Compatibility (HY) -4400 + (ID) 600
Total energy: -21353.0 ( -127.10 by residue)
QMean score : 0.309
(partial model without unconserved sides chains):
PDB file :
Tito_2ZJS.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2ZJS-query.scw
PDB file :
Tito_Scwrl_2ZJS.pdb
: