Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKKNTPEALIDLFEELKNLFETDTSL----NNQNSSRLQEILTTATIRVRKASQTVELEARSVFQNIHTLCFVEKIHLNPEEANVLKEIEKIALSKGFWGGMNTLNVTNQFPSN
4YTM Chain:A ((518-568))
------KKMMDLFKELKRLKTTDRSLIWNSDLTESLELQNLMLNATQTIVAAENRKE---------------------------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
4YTM.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -4817 for 204 contacts (-23.6/contact) +
2D Compatibility (PS) -4885 + (NN) -1152 + (LL) 4212
1D Compatibility (HY) -3200 + (ID) 900
Total energy: -10742.0 ( -52.66 by residue)
QMean score : 0.592
(partial model without unconserved sides chains):
PDB file :
Tito_4YTM.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4YTM-query.scw
PDB file :
Tito_Scwrl_4YTM.pdb
: