Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNRQTEFTLLIVGASLSILTFLGAM---LYTIIFGLNTLMVADTFGYYSSSEETILLGIITFFSVVAAFFALGSAVFGFIGAFKVKSDGPKVKTLGVCFIVLGGLQVFTIHGILFLIAGILTITKKEYKTNSKEDEGTKWE
2LSH Chain:A ((1-118))
SLPASAAKNAKLATSAAFAKQAEGTTCNVGSIACCNSPAETNNDSLLSGLLGAGLLNGLSGNTGSACAKASLIDQ-LGLLALVDHTEEGPVCKNIVACC----------------------PEGTTNCVAVDNAGAGTKAE
General information:
TITO was launched using:
RESULT:
Template:
2LSH.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -76136 for 877 contacts (-86.8/contact) +
2D Compatibility (PS) -11621 + (NN) 2626 + (LL) 2412
1D Compatibility (HY) 4400 + (ID) 750
Total energy: -79069.0 ( -90.16 by residue)
QMean score : 0.123
(partial model without unconserved sides chains):
PDB file :
Tito_2LSH.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2LSH-query.scw
PDB file :
Tito_Scwrl_2LSH.pdb
: