Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MRQYMKMVRPFDFVIIILLILGSFLPLILFSVAEAKHVGDDVVAIISQDGKVIREIPLTGHKGNEQFTIKGKGAQYNLMEVDGERIRIKED-NSPDQVGVKMGWKSKAGDTIVCLPHKVFVEIKSTNKKSKDPDTDLIVPN
2VLR Chain:D ((87-154))
------------------------------------------------------------------YLCAGAGSQGNLIFGKGTKLSVKPNIQNPDPAVYQLR-DSKSSDKSVCL----FTDFDSQTNVSQSKDSDVYI--
General information:
TITO was launched using:
RESULT:
Template:
2VLR.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -3860 for 241 contacts (-16.0/contact) +
2D Compatibility (PS) -6592 + (NN) 2893 + (LL) 5804
1D Compatibility (HY) -4400 + (ID) 1000
Total energy: -7155.0 ( -29.69 by residue)
QMean score : 0.362
(partial model without unconserved sides chains):
PDB file :
Tito_2VLR.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2VLR-query.scw
PDB file :
Tito_Scwrl_2VLR.pdb
: