Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
VAKIVPSVFGADIGRINEQLQVLEKNDIDLLHVDMMDGSFVPNIAFGPDQIKMMKK--GTKLQFDVHMMVYEPDRYIPRLVEAGAHMITVHQEATTHLHRTIQLIKSYGVRAGVVLNPGTPPSTLEYVLDDIDCILLMTVNPGLGGQKFFQSSLEKIRKTKAYIGNRPIQIEVDGGVNDELAKECTLAGADLIVVGSYLFEGDIEANLEKLAKGVLTE
3QC3 Chain:A ((6-220))
-CKIGPSILNSDLANLGAECLRMLDSGADYLHLDVMDGHFVPNITFGHPVVESLRKQLGQDPFFDMHMMVSKPEQWVKPMAVAGANQYTFHLEATENPGALIKDIRENGMKVGLAIKPGTSVEYLAPWANQIDMALVMTVEPGFGGQKFMEDMMPKVHWLRTQFPS--LDIEVDGGVGPDTVHKCAEAGANMIVSGSAIMRSEDPRSVINLLRNVCSE
General information:
TITO was launched using:
RESULT:
Template:
3QC3.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -163553 for 1801 contacts (-90.8/contact) +
2D Compatibility (PS) -23733 + (NN) -16517 + (LL) 152
1D Compatibility (HY) -16000 + (ID) 3800
Total energy: -223451.0 ( -124.07 by residue)
QMean score : 0.632
(partial model without unconserved sides chains):
PDB file :
Tito_3QC3.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3QC3-query.scw
PDB file :
Tito_Scwrl_3QC3.pdb
: