Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MQIFPAIDLKNGQCVRLFQGDFSKKTVVNEDPIAQAKAFATDGATYLHIVDLDGALEGRPINLEVIQKMKITAKIPVQVGGGIRSMAQVDYYLESGIDRVIIGSAALTDPDFLRAAVQKYGAKIAAGIDAK----NGFVATRGWLDVSQVSYLDLAKRMEKVGVETIIYTDISRDGTLTGPNLEQMANLKEHVKVNLIASGGVSSRADLEALAQL---GLYGAIAGKALYNHHISMSDIVEVEQIAY
2Y89 Chain:A ((5-235))
--LLPAVNVVEGRAVRLVQGKAGSQTEYGS-AVDAALGWQRDGAEWIHLVDLDAAF-GRGSNHELLAEVVGKLDVQVELSGGIRDDESLAAALATGCARVNVGTAALENPQWCARVIGEHGDQVAVGLDVQIIDGEHRLRGR-----DGGDLWDVLERLDSEGCSRFVVTDITKDGTLGGPNLDLLAGVADRTDAPVIASGGVSSLDDLRAIATLTHRGVEGAIVGKALYARRFTL-----------
General information:
TITO was launched using:
RESULT:
Template:
2Y89.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -136001 for 1860 contacts (-73.1/contact) +
2D Compatibility (PS) -24371 + (NN) -11344 + (LL) 1884
1D Compatibility (HY) -17200 + (ID) 3800
Total energy: -190832.0 ( -102.60 by residue)
QMean score : 0.575
(partial model without unconserved sides chains):
PDB file :
Tito_2Y89.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2Y89-query.scw
PDB file :
Tito_Scwrl_2Y89.pdb
: