Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
LANIEYEIIEEIGVLSENARGWRKELNKVSWNGRPPKYDIRDWSED--H-EKM-GKGITLTDEEAEVLKKLLD
1PCF Chain:A ((68-117))
---------------------KMRYVSVRDFKG-KVLIDIREYWMDPEGEMKPGRKGISLNPEQWSQLKEQI-
General information:
TITO was launched using:
RESULT:
Template:
1PCF.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) 9609 for 227 contacts (42.3/contact) +
2D Compatibility (PS) -4723 + (NN) 837 + (LL) 1852
1D Compatibility (HY) -1600 + (ID) 650
Total energy: 5325.0 ( 23.46 by residue)
QMean score : 0.130
(partial model without unconserved sides chains):
PDB file :
Tito_1PCF.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1PCF-query.scw
PDB file :
Tito_Scwrl_1PCF.pdb
: