Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MYIEIYTVNGESIRLDDDAKINNISIHELSKADLKNLFNEKCIELTKYDLTYFINTNQVNWFLVSEGIH
1VQ0 Chain:A ((254-274))
-------------------------LLVLDKKELEDMRKEGKGEVV-----------------------
General information:
TITO was launched using:
RESULT:
Template:
1VQ0.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -6512 for 79 contacts (-82.4/contact) +
2D Compatibility (PS) -2056 + (NN) 123 + (LL) 3320
1D Compatibility (HY) -800 + (ID) 250
Total energy: -6175.0 ( -78.16 by residue)
QMean score : 0.680
(partial model without unconserved sides chains):
PDB file :
Tito_1VQ0.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1VQ0-query.scw
PDB file :
Tito_Scwrl_1VQ0.pdb
: