Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MFNLQKGFPENFKWGSSTNAQQFEGGYKEGGKGLSIAD-VRVIPDMPDESDFESFKTASDHYHHYKEDIAYYGEMGFQIYRFTMAWSRIFPNGDETEPNDAGVEFYSNMLAELEKYNIEPVVTLYAYDMPLQLLEKYNGWLDRAIIKDYLHYVETVVKLFKGRVKYWVPFNEQNFISIDSEYMSGYRA---KNKAEVFQIQHHFNLCYAEATKLVHQIDP-DAKVGGNIGNICPYPMTCKPEDVEASDKVAQQLGYAYGDIYFRGYYPKYFLKEYEGVDFEQIILDDDLTIIKSSEPDFMSLTYYMSSAIEAKGEEEVVVMNGIKAPNPYCETTEWGWTIDPYGFKHYLQEFYHRY-QLPILILENGMGARDEKNTDDTIDDTYRIDYLASHIARMQEAVEEGCEIIGYLTWSATDLYSTREGFEKRYGFVYVDKDNSYKRLKKKSFYWYKKVIETNGNDLNY |
3CMJ Chain:A ((24-462)) | -----KKFPEGFLWGAATSSYQIEGAWNEDGKGESIWDRFTRIPGKIKNGD--SGDVACDHYHRYEQDLDLMRQLGLKTYRFSIAWARIQPDSSR-QINQRGLDFYRRLVEGLHKRDILPMATLYHWDLP-QWVEDEGGWLSRESASRFAEYTHALVAALGDQIPLWVTHNEP-MVTVWAGYHMGLFAPGLKDPTLGGRVAHHLLLSHGQALQAFRALSPAGSQMGITLNFNTIYPVSAEPADVEAARRMHSFQNELFLEPLIRGQYNQATLMAYP--NLPEFIAPEDMQTI-SAPIDFLGVNYYNPMRVKSSPQPPGIEVVQVESP-----VTAMGWEIAPEGLYDLLMGITRTYGKLPIYITENGAAFDDQPDQSGQVNDPQRVGYFQGHIGAARRALADGVDLRGYYAWSLLDNFEWAEGYSKRFGIIYVDFETQQRTL-KQSAQWYRDVIANNG----- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3CMJ.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -195087 for 3841 contacts (-50.8/contact) +
2D Compatibility (PS) -45828 + (NN) -17924 + (LL) 1152
1D Compatibility (HY) -28000 + (ID) 6950
Total energy: -292637.0 ( -76.19 by residue)
QMean score : 0.530
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