Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MFKNLFKKPKMKDEMLEMKQNQYGARAFNMMIIIVAIVILIKAVVLEASISELWVELLLLIVGGGYYFYSVLKNNVPFMPTISLKQTIRLVFLISA-----IFGISVGIRNVFFLYADNMSGTELSYQMMMFFFISLFTAIGSGVIFGALAYCLYQLSKWQEKNIMKKIEVENAED
1X1F Chain:A ((1-149))
GSSGSSGQERLKITALPLYFEG----------------FLLIKRSGYREYEHYWTELR-----GTTLFFYTDKKSIIYVDKLDIVDLTCLTEQNSTEKNCAKFTLVLPKEEVQLKTENTESGEEWRGFILTVTELSVPQNVSL------LPGQVIKLHEVLEREKKRRIESGPSSG
General information:
TITO was launched using:
RESULT:
Template:
1X1F.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -80642 for 923 contacts (-87.4/contact) +
2D Compatibility (PS) -14989 + (NN) 1388 + (LL) 3024
1D Compatibility (HY) -1200 + (ID) 1100
Total energy: -93519.0 ( -101.32 by residue)
QMean score : 0.186
(partial model without unconserved sides chains):
PDB file :
Tito_1X1F.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1X1F-query.scw
PDB file :
Tito_Scwrl_1X1F.pdb
: