Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MEEELEVIHKGLANAKNGFKAVPGKLYLTAT----YIVHKPNDYFDEEINIPLNRVAKIRGVRTKILGKELLSNILEIDMISG-----------------VKYQFVV---NKQKKWLEAVSEVLESRGESEKLG
1Y5O Chain:A ((12-112))
---------------------VSGIIAINEDVSPAELTWRSTDG-DKVHTVVLSTIDKLQATPAS-----SEKMMLRLIGKVDESKKRKDNEGNEVVPKPQRHMFSFNNRTVMDNIKMTLQQIISRYK------
General information:
TITO was launched using:
RESULT:
Template:
1Y5O.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -44449 for 450 contacts (-98.8/contact) +
2D Compatibility (PS) -8398 + (NN) -78 + (LL) 2424
1D Compatibility (HY) -1200 + (ID) 400
Total energy: -52101.0 ( -115.78 by residue)
QMean score : 0.416
(partial model without unconserved sides chains):
PDB file :
Tito_1Y5O.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1Y5O-query.scw
PDB file :
Tito_Scwrl_1Y5O.pdb
: