Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MLTMDDIVREGHPALREVATEVTFPLSDEEKKLGRDMLEFLINSQDEDLAEKYGLRGGVGIAAPQLAVTKRFLAIHVHDE-KDRLYSYVLYNPKIRSHSVQQACLSGGEGCLSVDREVPGYVVRSERVTIDAFDENGTPLKLRFKGYPAIVIQHEIDHLNGIMFYDHINKENPSYLPPDVDVFG
1LMH Chain:A ((2-180))
-LTMKDIIRDGHPTLRQKAAELELPLTKEEKETLIAMREFLVNSQDEEIAKRYGLRSGVGLAAPQINISKRMIAVLIPDDGSGKSYDYMLVNPKIVSHSVQEAYLPTGEGCLSVDDNVAGLVHRHNKITIKAKDIEGNDIQLRLKGYPAIVFQHEIDHLNGVMFYDHIDKDHP--LQPHTDA--
General information:
TITO was launched using:
RESULT:
Template:
1LMH.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -91255 for 1363 contacts (-67.0/contact) +
2D Compatibility (PS) -19051 + (NN) -9329 + (LL) 232
1D Compatibility (HY) -18800 + (ID) 5150
Total energy: -143353.0 ( -105.17 by residue)
QMean score : 0.614
(partial model without unconserved sides chains):
PDB file :
Tito_1LMH.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1LMH-query.scw
PDB file :
Tito_Scwrl_1LMH.pdb
: