Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MQEALGLVETKGLVGAIEAADAMVKSANVTLTGYEKIGSGLVTVMVRGDVGAVKAATEAGAAAAKNV--GTVMSTHVIPRPHTDVEEILPVRVKSDE
3SSQ Chain:A ((21-112))
MPIAVGMIETRGFPAVVEAADAMVKAARVTLVGYEKIGSGRVTVIVRGDVSEVQASVAAGVDSAKRVNGGEVLSTHIIARPHENLEYVLPIR-----
General information:
TITO was launched using:
RESULT:
Template:
3SSQ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -28944 for 683 contacts (-42.4/contact) +
2D Compatibility (PS) -10067 + (NN) -4752 + (LL) 256
1D Compatibility (HY) -10000 + (ID) 2700
Total energy: -56207.0 ( -82.29 by residue)
QMean score : 0.522
(partial model without unconserved sides chains):
PDB file :
Tito_3SSQ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3SSQ-query.scw
PDB file :
Tito_Scwrl_3SSQ.pdb
: