Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MIKLGNDWDELLKNEFNQPYYLTLRQFLKKEYQTK-KVFPDMYDIFNALKHTAYKDVKVVILGQDPYHGPGQAHGLSFSVQQGVQIPPSLQNIYLELHNDL-NCEIPNNGYLIPWADQGVLLLNTVLTVRAGQANSHRGQGWEILTNHIIEIINQKEEPVVFLLWGSNAKEKLQLLTNPKHTAFTSVHPSPLSASRGFMGCKHFSKTNQFLEQNGVKPIDWQIPSI
2EUG Chain:A ((7-220))
-------WHDVLAEEKQQPHFLNTLQTVASERQSGVTIYPPQKDVFNAFRFTELGDVKVVILGQDPYHGPGQAHGLAFSVRPGIAIPPSLLNMYKELENTIPGFTRPNHGYLESWARQGVLLLNTVLTVRAGQAHSHASLGWETFTDKVISLINQHREGVVFLLWGSHAQKKGAIIDKQRHHVLKAPHPSPLSAHRGFFGCNHFVLANQWLEQHGETPIDW-----
General information:
TITO was launched using:
RESULT:
Template:
2EUG.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -114377 for 1711 contacts (-66.8/contact) +
2D Compatibility (PS) -22741 + (NN) -11037 + (LL) 684
1D Compatibility (HY) -19600 + (ID) 6000
Total energy: -173071.0 ( -101.15 by residue)
QMean score : 0.598
(partial model without unconserved sides chains):
PDB file :
Tito_2EUG.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2EUG-query.scw
PDB file :
Tito_Scwrl_2EUG.pdb
: