Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
VKQAIGFIDSGVGGLTVVREVLKQLPHEQVYYLGDTARCPYGPRDKEEVAKFTWEMTNFLVDRGIKMLVIACNTATAAALYDIREKLDIPVIGVIQPGSRAALKATRNNKIGVLGTLGTVESMAYPTALKGLNRRVEVDSLACPKFVSVVESGEYKSAIAKKVVAESLLPLKSTKIDTVILGCTHYPLLKPIIENFMGDGVAVINSGEETASEVSALLDYHNLL-DATDEEIEHRFFTTGSTQIFKDIAKDWLNMPDMTVEHIKLGK
2OHO Chain:A ((13-273))
--RPIGFLDSGVGGLTVVCELIRQLPHEKIVYIGDSARAPYGPRPKKQIKEYTWELVNFLLTQNVKMIVFACNTATAVAWEEVKAALDIPVLGVVLPGASAAIKSTTKGQVGVIGTPMTVASDIYRKKIQLLAPSIQVRSLACPKFVPIVES-----SIAKKIVYDSLAPLVG-KIDTLVLGCTHYPLLRPIIQNVMGPSVKLIDSGAECVRDISVLLNYFDINGNYHQKAVEHRFFTTANPEIFQEIASIWLKQ-KINVEHVTL--
General information:
TITO was launched using:
RESULT:
Template:
2OHO.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -229669 for 2226 contacts (-103.2/contact) +
2D Compatibility (PS) -27467 + (NN) -9992 + (LL) 120
1D Compatibility (HY) -32800 + (ID) 6750
Total energy: -306558.0 ( -137.72 by residue)
QMean score : 0.618
(partial model without unconserved sides chains):
PDB file :
Tito_2OHO.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2OHO-query.scw
PDB file :
Tito_Scwrl_2OHO.pdb
: