Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MKNQFDRHRRLRKTKTMRDLVRETVLHTDDLIYPIFVKDGKEPKTEVVSMPGVFQYPLHELEEEMRVVESLGIKAVILFGI-PAEKDAV-GTQAYHDHGIIQEATRLIKKSFPKILVVADTCLCEFTDHGHCGVIEN-GEILNDESLELLKQTAVSQAAAGADIIAPSNMMDGFVQVIREGLDEAGFYDIPIMSYAVKYASAFYGPFRDAAGSAPQF--GDRKSYQMDPANREEALREAKSDEQEGADFLIVKPSLSYLDIMRDVKNNTNLPVVAYNVSGEYAMVKAAAQNGWIDEEKIVIEMLTSMKRAGATLIITYFAKDVSKYLNK |
| 1GZG Chain:A ((12-335)) | ----YTRLRRNRRDDFSRRLVRENVLTVDDLILPVFVLDGVNQRESIPSMPGVERLSIDQLLIEAEEWVALGIPALALFPVTPVEKKSLDAAEAYNPEGIAQRATRALRERFPELGIITDVALDPFTTHGQNGILDDDGYVLNDVSIDVLVRQALSHAEAGAQVVAPSDMMDGRIGAIREALESAGHTNVRVMAYSAKYASAYYGPFRDAVGSASNLGKGNKATYQMDPANSDEALHEVAADLAEGADMVMVKPGMPYLDIVRRVKDEFRAPTFVYQVSGEYAMHMGAIQNGWL-AESVILESLTAFKRAGADGILTYFAKQAAEQLRR |
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General information:
TITO was launched using:
| RESULT:
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Template: 1GZG.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -202439 for 2768 contacts (-73.1/contact) +
2D Compatibility (PS) -35363 + (NN) -16919 + (LL) 236
1D Compatibility (HY) -25200 + (ID) 7600
Total energy: -287285.0 ( -103.79 by residue)
QMean score : 0.616
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