Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MAKTIFYFSYRKTEELHAKAKELKKITTDYGYELTDDYQKANVIISIGGDGAFLKSVRETGFRQDCL-YAGIALTEQLGQYCDFHINQLDEIIKAAIEDRWLVRRYPTI-----YGTVNNTKAFYVLNEFNIRSSIIRTLTMDLYINDSHFETFRGDGMVISTPTGSTAYNKSVNGSIVDPLLPSMQVSELASINNNKFRTLGSSFILSPKRKLRIEIASEEGNNEFPMIGMDSEALSIQHVHEVNLEVGDRFINIIKLPKNSFWDKVKRNFL |
3V80 Chain:A ((27-262)) | -------------------------------YDMEYDDVEPEIVISIGGDGTFLSAFHQYEERLDEIAFIGIH-TGHLGFYADWRPAEADKLVKLLA---YQKVSYPLLKTTVKYG---KEATYLALNESTVKSSG-GPFVVDVVINDIHFERFRGDGLCMSTPSGTTAYNKSLGGALMHPSIEAMQLTEMASINNRVYRTIGSPLVF-PKHHV---VSLQPVNDKDFQISVDHLSILHRDVQEIRYEVSAKKIHFARFRSFPFWRRVHDSFI |
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General information:
TITO was launched using:
| RESULT:
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Template: 3V80.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -87722 for 1691 contacts (-51.9/contact) +
2D Compatibility (PS) -24120 + (NN) -4687 + (LL) 3764
1D Compatibility (HY) -19200 + (ID) 4050
Total energy: -136015.0 ( -80.43 by residue)
QMean score : 0.315
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