Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MVKAISSNLGYPRLGEKREWKRALEKFWNGAISEEELLAETKALRLHALKKQQEKGIDLIPVGDFSFYDQVLDTSVTFGIIPKRFQHDGGKVSLNTYFDIARGKSDAVASEMTKWFNTNYHYIVPELA-DADPKVLDNRALYYYEEAKKELGIEGKPVLVGPVTYL---KLGKGNDAENFE--ALLDKFIPAYVEILKELERAGAKWVQIDEPYLATSFDKSEIKLFEKVYQAFQTAVPNLKIELQTYFESL--DYYEEVVNLP-VAAIGIDFVHDHGDSLEALKAHGFPEDKYLAAGVIDGRNVWRSDLDAKLSLLTEIADYVTDGKLIVQPSNSLLHVPVTKLSEPDLDEVILGGLSFADQKLDEIAILTKALTDGAESVTAELEDARAAVTALNESSHR-NNLEVQEAIANLGNVRVDRELPFAERIKLQHAWLNLPLFPTTTIGSFPQSPEVRKTRADWLKGNITDAEYNAFIEKETARWIKIQEELDIDVLVHGEFERTDMVEYFGQKLAGFQATKFGWVQSYGSRAVRPPLIYGDVAFTEEITVKESVYAQSLTKRPVKGMLTAPVTIINWSFVRDDVPESVVANQVGLALRKEVEALERNGIKVIQVDEPALREGLPLKQARWEKYLNDAVYSFKLTTASVQNDTQIHTHMCYSDFDDIIDTISALDADVISIETSRSHGEIISTFEE-VTYDKEIGLGVYDIHSPRVPTVTEIQDNIRRALRAIDAKQFWINPDCGLKTRKEPETIAALQDMIKATKEVRAEYQVLEK |
1U1J Chain:A ((6-760)) | --------VGYPRMGPKRELKFALESFWDGKSTAEDLQKVSADLRSSIWKQMSAAGTKFIPSNTFAHYDQVLDTTAMLGAVPPRYGYTGGEIGLDVYFSMARGNASVPAMEMTKWFDTNYHYIVPELGPEVNFSYASHKAVNEYKEAKA-LGVDTVPVLVGPVSYLLLSKAAKGVD-KSFELLSLLPKILPIYKEVITELKAAGATWIQLDEPVLVMDLEGQKLQAFTGAYAELESTLSGLNVLVETYFADIPAEAYKTLTSLKGVTAFGFDLVRGT-KTLDLVKA-GFPEGKYLFAGVVDGRNIWANDFAASLSTLQALEGIVGKDKLVVSTSCSLLHTAVDLINETKLDDEIKSWMAFAAQKVVEVNALAKALAGQKDEA---LFSANAAALASRRSSPRVTNEGVQKAAAALKGSDHRRATNVSARLDAQQKKLNLPILPTTTIGSFPQTVELR-------------EDYVKAIKEEIKKVVDLQEELDIDVLVHGEPERNDMVEYFGEQLSGFAFTANGWVQSYGSRCVKPPVIYGDVSRPKAMTVFWSAMAQSMTSRPMKGMLTGPVTILNWSFVRNDQPRHETCYQIALAIKDEVEDLEKGGIGVIQIDEAALREGLPLRKSEHAFYLDWAVHSFRITNCGVQDSTQIHTHMCYSHFNDIIHSIIDMDADVITIENSRSDEKLLSVFREGVKYGAGIGPGVYDIHSPRIPSSEEIADRVNKMLAVLEQNILWVNPDCGLKTRKYTEVKPALKNMVDAAKLIRSQ------ |
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General information:
TITO was launched using:
| RESULT:
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Template: 1U1J.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -258941 for 6353 contacts (-40.8/contact) +
2D Compatibility (PS) -79000 + (NN) -34678 + (LL) 2452
1D Compatibility (HY) -65200 + (ID) 17900
Total energy: -453267.0 ( -71.35 by residue)
QMean score : 0.508
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