Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
LKVRGFEVVNEASRKFPEQTISLPIRGDKGSAGYDFFS--NETVTIVPGEKHIFWTDIKSYMQEDEVL-NIYVRSSIGIKKGLLLCNGTGIIDSSYYSNPGNDGNIGIAIKNFSNEPVSIEAGERVAQGVFQKYLVADTDIV----ANESRVGGVGSTGR
3TQZ Chain:A ((23-141))
----------------------LPAYATTGSAGLDLRACLDEPLKIEPDETCLISTGLAIYLGHSNVAATILPRSGLGHKHGIVLGNLVGLIDSDY------QGPLMVSCWNRGKEPYTINPGDRIAQLVVLPILKAQFAVVEEFEL-------------
General information:
TITO was launched using:
RESULT:
Template:
3TQZ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -48778 for 703 contacts (-69.4/contact) +
2D Compatibility (PS) -12182 + (NN) -2045 + (LL) 1236
1D Compatibility (HY) -8800 + (ID) 2000
Total energy: -72569.0 ( -103.23 by residue)
QMean score : 0.408
(partial model without unconserved sides chains):
PDB file :
Tito_3TQZ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3TQZ-query.scw
PDB file :
Tito_Scwrl_3TQZ.pdb
: