Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNENLITITGLTKKYRKRKPLNDINLSLQKGKIIGLLGPNGAGKTTLLNAISGLLKPTSGTINLAENSKIAYLPSEDFLPNMV--ICDYFRIYHSF-FP--DFDQEKAKQMIRSFG--INIKE----NTKYLSKGNAAKVMLALILCRDVDLYLLDEPFSEIDLISRDDL---IKSIATFLKEDATLVVTTHLIQDMEMMFDEIIFLKRGKIIEQIDTETLREEYRKSVMDYYREVFGHA
1V43 Chain:A ((13-234))
-----VKLENLTKRFGNFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRD-VTYLPPKDRNISMVFQ---HMTVYENIAFPLKKFPKDEIDKRVRWAAELLQIEELLNRYPAQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLK--VTTIYVTHDQVEAMTMGDRIAVMNRGQLL-QIGSPT--------------------
General information:
TITO was launched using:
RESULT:
Template:
1V43.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -160637 for 1471 contacts (-109.2/contact) +
2D Compatibility (PS) -20992 + (NN) -7907 + (LL) 2472
1D Compatibility (HY) -13200 + (ID) 3250
Total energy: -203514.0 ( -138.35 by residue)
QMean score : 0.526
(partial model without unconserved sides chains):
PDB file :
Tito_1V43.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1V43-query.scw
PDB file :
Tito_Scwrl_1V43.pdb
: