Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MKKGLLITVMLMVMLALGACSSSESKEDQWSRIKKDKEVVIGLDDSFVPMGFRDKDDNLVGFDIDLAKAVFAEYGIKAKFTPIDWTMKESELKNGSIDLIWNGYTVTDARKKQVAFSQPYMKNEQVLVTLKSSNINQFSDMKNKTLGAQNGASSIDDMAKKPEVLTDIINNNEPELYDTFDTAFIDLNNKRIDGLIIDEVYARYYIDKQKNKDDYNIITGGFDATDFAVGMRKSDKELQKKINEAFEKLYKEGKMQEISKKWFGDDEIAKQ |
3VVE Chain:A ((20-256)) | --------------------GGSEFQVRSFEEIKRSGEIRIGTEGAFPPFNYFDERNQLTGFEVDLGNAIAERLGLKPRWIAQSFDTLLIQLNQGRFDFVIASHGITEERARAVDFTNPHYCTGGVIVSRKGGP-RTAKDLQGKVVGVQVGTTYMEAAQKIPGI-------KEVRTYQRDPDALQDLLAGRIDTWITDRFVAKEAIKERKLENTLQVGELVFQER-VAMAVAKGNKSLLDALNRALAELMQDGTYARISQKWFGED----- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3VVE.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -52116 for 1989 contacts (-26.2/contact) +
2D Compatibility (PS) -26062 + (NN) -12538 + (LL) 3644
1D Compatibility (HY) -14800 + (ID) 3250
Total energy: -105122.0 ( -52.85 by residue)
QMean score : 0.443
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