Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MNLLVVGSGGREHAISKKLLASNNVEKVFCAPGNDGMRLDDIQ--------LVAISETDKAGLIDFAKKAEIAFVIVGPEVPLLEGVVDALEEAGIKAFGPKANAALIEGSKDFAKQFMEKYAIPTAASRTFTDYAEAKAYLNERGVPIVIKADGLAAGKGVTVALEMEEAVLALKDMMLEEKFGDASLKVVIEDFLAGEEFSLMAFVNGEEVYPMSIAQDHKRAYEGDKGPNTGGMGAYSPVPHISEAV--IEEAVQKILLPTAKGMVKEGRYFRGILYAGLILTADGPKVIEFNARFGDPETQVVLPRLESDFA-ALIDALLHNEKPDVRFKKTGLTLGVVLASAGYPEHYEKGNKLTGLNDIAEDVAIYHAGTKQDENGDFISDGGRVLLLAKEAETMSDARTLLYPEMQKLDNPNFFYRIDIGTKAE |
| 1VKZ Chain:A ((16-410)) | VRVHILGSGGREHAIGW-AFAKQGYE-VHFYPGNAGTKRDGTNHPYEGEKTLKAIPEED--------------IVIPGSEEFLVE-----RS----NVFGPVKEVARLEGSKVYAKRFMKKYGIRTARFEVAETPEELREKIKKFSPPYVIKADGLARGKGVLILDSKEETIEKGSKLIIGELIKGVKGPVVIDEFLAGNELSAMAVVNGRNFVILPFVRDYKRLMDGDRGPNTGGMGSWGPVEIPSDTIKKIEELFDKTLW----GVEKEGYAYRGFLYLGLMLHDGDPYILEYNVRLGDPETEVIVTLNPEGFVNAVLEGYRGGKMEPV--EPRGFAVDVVLAARGYPDAPEKGKEIT----LPEEGLIFFAGV-AEKDGKLVTNGGRVLHCMGTGETKEEARRKAYELAEKVHFEGKTYRRDI----- |
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General information:
TITO was launched using:
| RESULT:
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Template: 1VKZ.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -169430 for 3350 contacts (-50.6/contact) +
2D Compatibility (PS) -41619 + (NN) -20189 + (LL) 2484
1D Compatibility (HY) -23600 + (ID) 7650
Total energy: -260004.0 ( -77.61 by residue)
QMean score : 0.400
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