Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | LDKKFLLTNSTIGIIGGGQLGRMLALAAKAMGYRIIVLDPTADCP---AAQVSDEQIIADYDDKVALRELSEKADVVTYEFENIDYDALKMTQNLVSVPQGSELLSITQDRILEKAYLESANINIAPYAVIVEQDEIENEIKSIGYPAVLKTAQGGYDGKGQVVIHDARDIETAARLLRYG--SCVLEAWIPFEKEISVVVARNLDGQIETFPVAENVHVNNILHTTMVPADVAADVYEEAEEIARKLAEVLQLCGVLAVEMFVTKSGAIYVNELAPRPHNSGHFTIEACSISQFTQHIRAIVGLPLVKPELLKPAVMINILGQHVDAVNKQMVNYPHWFVHYYGKKEAKINRKMGHVTV-LADEPKAVIQDLEETQIWK |
| 4MA5 Chain:A ((3-346)) | -----------IGIIGAGQLARMLSLAGTPLGLEFHCLGKNGDCAEEVVKTVTDIEL-TKVNDVVAW---AKQFDVITFENENISHELIKAINHEVSVYPSAKAIAISQDRLLEKSFMQDHGIATAKFVNIDSLAKLQSAVDDHGLPAILKTRRFGYDGKGQFVIRSQEDITKAWDVLKDAPDGLIYEAFVDFDYEVSQICTADLKGNIAFYPLARNTHKQGIIVESEAPFENVV-LAEKAQQIAKILVKEFAYVGTLAIEFFV-K--ELIVNEIAPRVHNSGHWSIDGAVTSQFENHVRAIAGL-ILGDTTSRKTVMLNCIGGM--PATKDLAALDRVKIHSY-NKEPRKGRKVGHLNLNLNDE--------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 4MA5.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -200525 for 2841 contacts (-70.6/contact) +
2D Compatibility (PS) -37436 + (NN) -13345 + (LL) 2360
1D Compatibility (HY) -27200 + (ID) 6250
Total energy: -282396.0 ( -99.40 by residue)
QMean score : 0.456
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