Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MDLPLSKRVKGVAPSPTLAITAKAKQMKQEGIDVIGLGAGEPDFNTPQNIIDAAIESMNKGFTKYTPSSGIIELKQAIVDKLKKDQFLNYE-TNQIFVGTGAKHVLYSAFQTILDPGDEVIIPVPYWVTYPEQVKLAGGIPVFVETGFDADFKISAADFEKAITKKTKAIVLNSPNNPSGMCYTKEELIAIGEVAEKHQIYILSDEIYEKLYYGNKADLVSIASLSDRLYDLTIVINGVSKAYSMTGWRIGYAAANKEIIAGMSKLADHLTSNPTANAQYAALEAYVG--SQEVPEKMYQAFEERMERFYPELNSIPGFKPKKPDGAFYFFIEVKEAA-HKKGFQDVDAFVAALLEEAKVAVIPGSGFGMP--DYIRLSYATNPDLFQEAINRIKSFMK |
1DJU Chain:A ((2-383)) | ----LSDRLELVSA-------------K----DVISLGIGEPDFDTPQHIKEYAKEALDKGLTHYGPNIGLLELREAIAEKLKKQNGIEADPKTEIMVLLGANQAFLMGLSAFLKDGEEVLIPTPAFVSYAPAVILAGGKPVEVPTYEEDEFRLNVDELKKYVTDKTRALIINSPCNPTGAVLTKKDLEEIADFVVEHDLIVISDEVYEHFIY-DDARHYSIASL-DGMFERTITVNGFSKTFAMTGWRLGFVAAPSWIIERMVKFQMYNATCPVTFIQYAAAKALKDERSWKAVEEMRKEYDRRRKLVWKRLNEM-GLPTVKPKGAFYIFPRIRDTGLTSKKFSEL------MLKEARVAVVPGSAFGKAGEGYVRISYATAYEKLEEAMERMERVLK |
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General information:
TITO was launched using:
| RESULT:
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Template: 1DJU.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -216037 for 3198 contacts (-67.6/contact) +
2D Compatibility (PS) -40110 + (NN) -23327 + (LL) 1968
1D Compatibility (HY) -31600 + (ID) 7400
Total energy: -316506.0 ( -98.97 by residue)
QMean score : 0.575
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