Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | VSLYMLVSTFAVAFIITVIGVPLFIPFLVKLKFGQSIRDEGPKMHEKKSGTPTMGAVVFITAMLISFLVFSFISGEVSAATWLLFIAL---ALFGALGFLDDYIKVVQKRNLGLTSK---QKFLGQVVISILFYLVYHFNDFAETLNIPFTNIEVDLGWFFVIFILFWLVGFSNAVNLTDG--LDGLVSGLSVIAFSAFGVIAFYQEQMDVAIFCFAIVGGMLGFLLFNKNPAKIFMGDTGSLALGGSIAAISILVHQEWLLLLIGIIFVIETASVILQVFYFKATGGKRIFRMTPIHHHFELGGWSEWRVVLTFWGIGLVGAIISVCVVIF |
| 1A1R Chain:B ((12-190)) | -------------------------PITAYAQQTRGLLGCIITSLTGRDKNQVEGEVQIVSTATQTFLA-TCING----VCWTVYHGAGTRTIASPKGPVIQMYTNVDQDLVGWPAPQGSRSLTPCTCGSSDLYLVTRHAD-----VIPVRRRGDSRGSLLSPRPISYLKGSSGGPLLCPTGHAVGLFRAAVCTRGVAKAVDFIPVENLETTMR---------------------------------------------------------------------------------------------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 1A1R.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -142951 for 1330 contacts (-107.5/contact) +
2D Compatibility (PS) -17242 + (NN) 9572 + (LL) 14456
1D Compatibility (HY) 2400 + (ID) 1400
Total energy: -135165.0 ( -101.63 by residue)
QMean score : 0.186
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