Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MKKFLKVWSV-LTIICMTVVVF-GGA-----------------------LVTKTGSADGC-GNSWPLCNGQLVRLTDVTP-EKLIEFMHRMT-------------TG--------------ISSIFV-IVLAICAWIYMK-NRRETKPLAIIAVLFLII----QALMGMAAVVWGQNPYIMAL-HFGISIICYA-S-IVLLAL--------MIFEV----DRKFDARNLVMGTKLRVNIYALTIYTYLAVYTGALVRHEKASMAVPVWP-FENG-HFIMPTSVQDYVQYFHRLAAFILIVWLLYVTWLVFRDYRRYR--------VLTFSMVLSLVFIALQAVTGA-LSVYT-GVN--------------------LYIALAHSLIIT-MLFALLCYLCLLA-SRSKSNRLRIK------ |
| 4QT9 Chain:A ((19-432)) | ----LSDDALMDTVQRRTFLYFWEGAEPNSGLAPERYHVDGVYPQNDANVVTSGGSGFGIMAILAGIDRGYVTREEGLARMERIVSFLEKADRFHGAYPHWWYGDTGKVKPFGQKDNGGDLVETAFLMQGLLAVHQYYANGNDKEKAIAQRIDRLWREVDWDWYRKGGQNVLYWHWSPTYGWEMDFPIHGYNECMIMYILAAASPTHGVPAAVYHDGWAQNGAIVSPHKVEGIELHLR-YQGTEAGPLFWAQYSFLGLDPVGLKDEYCPSYFHEMRNLTLVNRAYCIRNPKHYKGFGPDCWGLTASYSV-DGYAAHSPNEQDDKGVISPTAALSSIVYTPEYSLQVMRHLYNMGDKVFGPFGFYDAFSETDNWYPQRYLAIDQGPIAVMIENYRTGLLWKLFMSHPDVQAGLTKLGFNTN |
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General information:
TITO was launched using:
| RESULT:
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Template: 4QT9.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -337041 for 2306 contacts (-146.2/contact) +
2D Compatibility (PS) -29064 + (NN) 12237 + (LL) 804
1D Compatibility (HY) -2400 + (ID) 2750
Total energy: -358214.0 ( -155.34 by residue)
QMean score : 0.128
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