Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MFTKKRGLMLLAAVLLTVCAIWEYAMPTDAAVKSYYVKVEDAGKPVQKNQFKGFKYVSNVYDDKGKQKQLTFYSEKELTKNEQFKVLVGENKMVVNYKKIKNVPDKIKYLAEK
1VFZ Chain:A ((57-128))
---------------------WSHTSPEDINYASQKQVYRDIGEEMLQHAFEGYNVCIFAYGQTGAGKSYTMMGKQE--KDQQ------------------------------
General information:
TITO was launched using:
RESULT:
Template:
1VFZ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) 21726 for 288 contacts (75.4/contact) +
2D Compatibility (PS) -6003 + (NN) -772 + (LL) 5372
1D Compatibility (HY) -2400 + (ID) 750
Total energy: 17173.0 ( 59.63 by residue)
QMean score : 0.266
(partial model without unconserved sides chains):
PDB file :
Tito_1VFZ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1VFZ-query.scw
PDB file :
Tito_Scwrl_1VFZ.pdb
: