Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKKHIVLIVVACITVIAVFMYIVQINNSELKYQNRAQIKIASQMASQNEQTDNSIVSEITYK
1PLP Chain:? ((1-25))
--------------------------MDKVQYLTRSAIRRASTIEMPQQAC-----------
General information:
TITO was launched using:
RESULT:
Template:
1PLP.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) 6836 for 92 contacts (74.3/contact) +
2D Compatibility (PS) -2732 + (NN) -930 + (LL) 4500
1D Compatibility (HY) -1200 + (ID) 250
Total energy: 6224.0 ( 67.65 by residue)
QMean score : 0.310
(partial model without unconserved sides chains):
PDB file :
Tito_1PLP.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1PLP-query.scw
PDB file :
Tito_Scwrl_1PLP.pdb
: