Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKITPPQPFLFEKGKRAVLLLHGFTGSSADVRILGRFLQENNYTCYAPQYRGHGVSPDLLLKTGPNDWWEDVLEAYDHLKSLGYTEIAVAGLSLGGLFSLKLGFSRP-LKGIIAMSTPTRMDSSSPIIQGFLDYVRNYKKLEGKTTEQIDAEMVAYKDAPMNTIAKLKDEISGVVAEIDMIYAPIMVVQGEKDDMVDVSGAQLIYDTVESTKKELHWFKESGHVITLDKERKEVNQAILTFLDSLDWQE
4KE8 Chain:A ((32-265))
------EPFYAENGPVGVLLVHGFTGTPHSMRPLAEAYAKAGYTVCLPRLKGHGTHYEDMERTTFHDWVASVEEGYGWLKQRCQT-IFVTGLSMGGTLTLYLAEHHPDICGIVPINAAVDIPAIAAGMTGGGELPRYLDSI-GSDLKNPDVKELAYEKTPTASLLQLARLMAQTKAKLDRIVCPALIFVSDEDHVVPPGNADIIFQGISSTEKEIVRLRNSYHVATLDYDQPMIIERSLEFF-------
General information:
TITO was launched using:
RESULT:
Template:
4KE8.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -139742 for 2113 contacts (-66.1/contact) +
2D Compatibility (PS) -24312 + (NN) -3758 + (LL) 832
1D Compatibility (HY) -14000 + (ID) 3450
Total energy: -184430.0 ( -87.28 by residue)
QMean score : 0.437
(partial model without unconserved sides chains):
PDB file :
Tito_4KE8.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4KE8-query.scw
PDB file :
Tito_Scwrl_4KE8.pdb
: