Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MAKDVGIDLGTANVLIHVKGRG---IVVNE------PAVVAI-------------NNKTGQVLAVGTEARDMVGRTPGDITAIKPMKDGVIADFDIVQEMLRFFIQ------------------------KLNLKTFFSRP--RILICCPTNITSVEQKAIREVAEKSGGKQVFLEEEPKVAAIGAGMEIFEPSGN-MIIDIGGGTADVAVLSMGD-----IVTSQSVKVAGNKWDADILNYVKRKYNLLIGE------RTAENIKVTIGTACQG-AKEEKMEIRGRDLVSGLPKTISITSSEVEEAIHDSLHLMVLAAKQVLEQTPPELSADIIDRGIIMTGGGSLLHGLDELMSEQL--KVPVLITENPLDVVALGTGILLDSLTNKKRNRF |
| 3LDP Chain:A ((8-377)) | ----VGIDLGTTYSCVGVFKNGRVEIIANDQGNRITPSYVAFTPEGERLIGDAAKNQLTSNPENTVFDAKRLIGRTWNDPSVQQDIK---FLPFKVVEKKTKPYIQVDIGGGQTKTFAPEEISAMVLTKMKETAEAYLGKKVTHAVVTVPAYFNDAQRQATKDAGTIAGLNVMRIINEPTAAAIAYGLDKREGEKNILVFDLGGGTFDVSLLTIDNGVFEVVATNGDTHLGGEDFDQRVMEHFIKLYKKKTGKDVRKDNRAVQKLRREVEKAKRALSSQHQARIEIESFYEGEDFSETLTRAKFEELNMDLFRSTMKPVQKVLEDS--DLKKSDIDE-IVLVGGSTRIPKIQQLVKEFFNGKEPSRGI-NPDEAVAYGAAV------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3LDP.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -143329 for 2407 contacts (-59.5/contact) +
2D Compatibility (PS) -32979 + (NN) -12402 + (LL) 712
1D Compatibility (HY) -10000 + (ID) 3850
Total energy: -201848.0 ( -83.86 by residue)
QMean score : 0.360
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