Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNRLKDQYLKEIVPALMSKFNYDSVMEVPKIDKIVINTGVGDATANAKVLDSAVEELALITGQKPVITKAKNSIAGFRLREGMPIGAKVTLRGERMYDFLDKLVTVSLPRVRDFRGVSKKAFDGRGNYTLGVREQLIFPEIDYDQVSKVRGMDVVIVTTAKSDEESHELLTQLGMPFQK
5AKA Chain:F ((2-178))
--KLHDYYKDEVVKKLMTEFNYNSVMQVPRVEKITLNMGVGEAIADKKLLDNAAADLAAISGQKPLITKARKSVAGFKIRQGYPIGCKVTLRGERMWEFFERLITIAVPRIRDFRGLSAKSFDGRGNYSMGVREQIIFPEIDYDKVDRVRGLDITITTTAKSDEEGRALLAAFDFPFRK
General information:
TITO was launched using:
RESULT:
Template:
5AKA.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -73765 for 1210 contacts (-61.0/contact) +
2D Compatibility (PS) -18125 + (NN) -4334 + (LL) 128
1D Compatibility (HY) -20800 + (ID) 5350
Total energy: -122246.0 ( -101.03 by residue)
QMean score : 0.409
(partial model without unconserved sides chains):
PDB file :
Tito_5AKA.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-5AKA-query.scw
PDB file :
Tito_Scwrl_5AKA.pdb
: