Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MSIPSFLKLVEIQTKIASVFPFMLGTLFVVYQYDMFKPINTLIIFGSMLIFDLTTTAINNYMDY-----RKATDNHDYDYRTTSNVIGQEQIPVRTVIITIFLMFFIATGLGVWLVFRTDLLVLLIGFVCFCIGILYTFGPVPLSRMPLGEIFSGVTMGFGIFFLAVYVNAYDAGIANLLWQGEMVTIQFNLIEIIRIGV--VSLPCIFTIANIMLANNLCDLDEDIRNHRYTLPYYIGRKMGVLLFNTLYYASFLAVVVSVAINFLHPIMLLSLITIY--PVYRNL------------VKFNKEQVKSKTFVIGIR---NFVLINATLTILMAVSVVLQQLT---- |
| 4NTC Chain:A ((2-326)) | MSIG---KLLSNGALLVDVLIIGAGPAGLSTATGLARQLHTAVVFDSGVYRNAKTQHMHNVLGWDHRNPAELRAAGRADLTTRYSTIQFQNSTIEAIRQVETNQLFEARD-NEGHSWYGRKVVLATGVRD-----------IPLDIEGYSECWAN---GIYHCLFCDGYEERGQETVGVLALGPIAN-PARALHLARMALRLSESVTIYTNGNEQLAKEIQQAAEESPVGASGLKFE---ARPIRRFEKGDVAKTVIVHLGESESKTEGFLVYNPQTEVNGPFAKQLALNMTEGGDILTTPPFYETSVPGVFAVGDCATPLKAVTPAVSMGSLAAGGLVAQLQAQAL |
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General information:
TITO was launched using:
| RESULT:
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Template: 4NTC.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -363742 for 2452 contacts (-148.3/contact) +
2D Compatibility (PS) -31568 + (NN) -352 + (LL) 1808
1D Compatibility (HY) 3200 + (ID) 2350
Total energy: -393004.0 ( -160.28 by residue)
QMean score : 0.164
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