Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSFLDKELVNLHGSAKNADEAIVQAGELLVNAGYVSEQYVEKMVESYHENGAYFVIAP-QIAIPHARPTDGVENSAVSLVVLKDGVNFGHAAND----PVRLVFGLAATSSEAHLKVIQKIVSLLSNNDNIEKMIHSED---YQAIGELVEG
4M62 Chain:S ((33-149))
----------------------------LINDGMVVSDFADHVITREQNFPTGLPVEPVGVAIPHTD-SKYVRQNAISVGILAEPVNFEDAGGEPDPVPVRVVFMLALGNWFDITNVLWWIMDVIQDEDFMQQLLVMNDDEIYQSI------
General information:
TITO was launched using:
RESULT:
Template:
4M62.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -86898 for 724 contacts (-120.0/contact) +
2D Compatibility (PS) -11355 + (NN) -2692 + (LL) 2192
1D Compatibility (HY) -11200 + (ID) 1550
Total energy: -111503.0 ( -154.01 by residue)
QMean score : 0.548
(partial model without unconserved sides chains):
PDB file :
Tito_4M62.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4M62-query.scw
PDB file :
Tito_Scwrl_4M62.pdb
: