Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MPTINQLVRKPRQSKIKKSTSPALNKGLNSFKRELTDVNSPQKRGVCTRVGTMTPKKPNSALRKYARVRLSNGIEVTAYIPGIGHNLQEHSVVLIRGGRVKDLPGVRYHIVRGALDTAGVENRGQSRSKYGTKKPKK
4JYA Chain:L ((1-123))
-PTINQLVRKGREKVRKKSKVPALK-------------GAPFRRGVCTVVRTVTPKKPNSALRKVAKVRLTSGYEVTAYIPGEGHNLQEHSVVLIRGGRVKDLPGVRYHIVRGVYDAAGVKDRKKSRSKYGTKKPKE
General information:
TITO was launched using:
RESULT:
Template:
4JYA.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -17520 for 813 contacts (-21.5/contact) +
2D Compatibility (PS) -13049 + (NN) -5901 + (LL) 912
1D Compatibility (HY) -11200 + (ID) 4700
Total energy: -51458.0 ( -63.29 by residue)
QMean score : 0.515
(partial model without unconserved sides chains):
PDB file :
Tito_4JYA.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4JYA-query.scw
PDB file :
Tito_Scwrl_4JYA.pdb
: