Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MRAAVLYE-NNVIKAEQIDEATCGKDQVRVEVKAVGICGSDIHKMQTRW--KYPLPAVMGHEFAGVITEIGSEVTNVAMGDRVAGIP--LEPCMECNYCKAGDFALCDNYRMVGSHFHGGFAENVVMKADNVISIGD-LDFEEGAMIEPLAVSMHGVLGIQ-PRLGDTVIVFGIGTIGILVVQCLLLAGVKDIIAVDISDKKLADAREFGCKYTINPKNED----LKERVFAYTNGLGADIALECAGSKITQEQCLLVTKKKGKVGFLGIAYADVLLHEEAFENIFRRELTLKGFWNSYSAPFPGEEWRTSIEFVKQGRIKLKPLISHRYKLEETKEAFDMILSREHDYNKVMILPQKGDD |
3PII Chain:A ((1-337)) | MKAAVVEQFKEPLKIKEVEKPTISYGEVLVRIKACGVCHTDLHAAHGDWPVKPKLPLIPGHEGVGIVEEVGPGVTHLKVGDRV-GIPWLYSACGHCDYCLSGQETLCEHQKNAGYSVDGGYAEYCRAAADYVVKIPDNLSFEEAAPIFCAGVTTYKALKVTGAKPGEWVAIYGIGGFGHVAVQYAKAMGL-NVVAVDIGDEKLELAKELGADLVVNPLKEDAAKFMKEKVG------GVHAAVVTAVSKPAFQSAYNSIRRGGACVLVG------LPPEEMPIPIF--DTVLNGIKIIGSIVGTRKDLQEALQFAAEGKVK---TIIEVQPLEKINEVFDRMLKGQINGRVVLTLE----- |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 3PII.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) -248547 for 2892 contacts (-85.9/contact) +
2D Compatibility (PS) -34358 + (NN) -3680 + (LL) 1280
1D Compatibility (HY) -16000 + (ID) 5550
Total energy: -306855.0 ( -106.10 by residue)
QMean score : 0.395
|
|
|