Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNKLNEALKKAERIVFLTGAGVSVPSGIPDYRSKNGLYAGMSSP----EYMLSHTCLVREPEKFYQFVTENMY-YPNAVPNVIHKKMAEIETEKDV-TIITQNIDGLHEKAGSKKVVNFHGSLYHCYCQNCGMTVTAKDYLK----SDIHT--DCGGVIRPDVVLYEEAISESAIDQSLTAIRKADLIVIVGTSFRVSPFCNLTDYRNKKARIFAVNKERISLPYPFEMMESDAVKVFEEI
2H4H Chain:A ((3-199))
MKEFLDLLNESRLTVTLTGAGISTPSGIPDFRGPN---------VFDIDFFYSH------PEEFYRFAKEGIFPMLQAKPNLAHVLLAKLEEKGLIEAVITQNIDRLHQRAGSKKVIELYGNVEEYYCVRCEKKYTVEDVIKKLESSDVPLCDDCNSLIRPNIVFFGENLPQDALREAIGLSSRASLMIVLGSSLVVYPAAEL--------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
2H4H.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -91862 for 1359 contacts (-67.6/contact) +
2D Compatibility (PS) -19265 + (NN) -7001 + (LL) 4032
1D Compatibility (HY) -17600 + (ID) 3450
Total energy: -135146.0 ( -99.45 by residue)
QMean score : 0.627
(partial model without unconserved sides chains):
PDB file :
Tito_2H4H.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2H4H-query.scw
PDB file :
Tito_Scwrl_2H4H.pdb
: