Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MKLLVVGSGGREHAIAKKLLASKDVDQVFVAPGNDGMTLDGLDLVNIGISEHSRLIDFAKENEIAWTFIGPDDALAAGIVDDFNSAGLRAFGPTKAAAELEWSKDFAKEIMVKYNVPTAAYGTFSDFEKAKAYIEEQGAPIVVKADGLALGKGVVVAETVEQAVEAAQEMLLDNKFGDSGARVVIEEFLDGEEFSLFAFANGDKFYIMPTAQDHKRAFDGDKGPNTGGMGAYAPVPHLPQSVVDTAVETIIKPVLEGMIAEGRPYLGVLYAGLILTADGPKVIEFNSRFGDPETQIILPRLTSDFAQNIDDIMMG--IEPYITWQKDGVTLGVVVASEGYPLDYEKG--VPLPEKTDGDIITYYAGAKFAENSKALLSNGGRVYMLVTTEGSVKAGQDKIYTQLAQQDTTGLFYRNDIGSKAIK |
1VKZ Chain:A ((16-410)) | VRVHILGSGGREHAIGWAF--AKQGYEVHFYPGNAGTKRDGTNHP----YEGEKTLKAIPEEDI--VIPGSEEFLVE------RS---NVFGPVKEVARLEGSKVYAKRFMKKYGIRTARFEVAETPEELREKIKKFSPPYVIKADGLARGKGVLILDSKEETIEKGSKLIIGELIKGVKGPVVIDEFLAGNELSAMAVVNGRNFVILPFVRDYKRLMDGDRGPNTGGMGSWGPV-EIPSDTIKK-IEELFDKTLWGVEKEGYAYRGFLYLGLMLHDGDPYILEYNVRLGDPETEVIVTLNPEGFVNAVLEGYRGGKMEPV---EPRGFAVDVVLAARGYPDAPEKGKEITLPEEG----LIFFAGV--AEKDGKLVTNGGRVLHCMGTGETKEEARRKAYELAEKVHFEGKTYRRDIA----- |
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General information:
TITO was launched using:
| RESULT:
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Template: 1VKZ.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -159034 for 3422 contacts (-46.5/contact) +
2D Compatibility (PS) -42423 + (NN) -18617 + (LL) 1832
1D Compatibility (HY) -24400 + (ID) 7200
Total energy: -249842.0 ( -73.01 by residue)
QMean score : 0.531
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