Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MNLFKTIGIIGGGQLGQMMAIAAIYMGHKVITLDPASDCSASRVSEVIVAPYDDVEALGQLAARCDVLTYEFENVDADGLDAVVSAGQLPQGTDLLRISQNRIFEKDFLANKAGVTVAPYKVVTSSLDLEGF--DLTKTYVLKTATGGYDGHGQKVIRSAEDLPEAQQLANSAE--CVLEEFVDFDLEISVIVSGNGQ-DVTVFPVQENIHRNNILSKTIVPARISDQLADKAKKMAVQIAKELQLSGTLCVEMFVTADDIIVNEIAPRPHNSGHYSIEACDFSQFDTHILGVLGQPLPPIKLHAPAVMLNVLGQHVQQAIDYVAENPSAHLHIYGKLEAKHNRKMGHVTVFTEDADEVEEF |
| 4MA5 Chain:A ((3-350)) | ------IGIIGAGQLARMLSLAGTPLGLEFHCLGKNGDCAEEVVKTVTDIELTKVNDVVAWAKQFDVITFENENISHELIKAINHEVSVYPSAKAIAISQDRLLEKSFMQDH-GIATAKFVNIDSLAKLQSAVDDHGLPAILKTRRFGYDGKGQFVIRSQEDITKAWDVLKDAPDGLIYEAFVDFDYEVSQICTADLKGNIAFYPLARNTHKQGIIVESEAPFE-NVVLAEKAQQIAKILVKEFAYVGTLAIEFFVK--ELIVNEIAPRVHNSGHWSIDGAVTSQFENHVRAIAGLILGDTT-SRKTVMLNCIGG--MPATKDLAALDRVKIHSYNK-EPRKGRKVGHLNLNLN--DETDEY |
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General information:
TITO was launched using:
| RESULT:
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Template: 4MA5.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -173077 for 2874 contacts (-60.2/contact) +
2D Compatibility (PS) -38235 + (NN) -18512 + (LL) 1624
1D Compatibility (HY) -24000 + (ID) 6000
Total energy: -258200.0 ( -89.84 by residue)
QMean score : 0.501
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