Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKKVCFVCLGNICRSPMAEFVMANLDKEDSLS----VESRATSTWEHGNPIHRGTQAILQRYQIPYINDKGSQPISKDDLAYFDYIIGMDEQNVKDLKALSQ------------GTYDDKISLFCDGGVPDPWY--TGDFEETYRLVNDGCKQWLTLINNSRD
1DG9 Chain:A ((6-153))
-KSVLFVCLGNICRSPIAEAVFRKLVTDQNISDNWVIDSGAVSDWNVGRSPDPRAVSCLRNHGINTAH--KARQVTKEDFVTFDYILCMDESNLRDLNRKSNQVKNCRAKIELLGSYDPQKQLI----IEDPYYGNDADFETVYQQCVRCCRAFLEKVR----
General information:
TITO was launched using:
RESULT:
Template:
1DG9.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -55586 for 1034 contacts (-53.8/contact) +
2D Compatibility (PS) -13991 + (NN) -4480 + (LL) 184
1D Compatibility (HY) -12000 + (ID) 2550
Total energy: -88423.0 ( -85.52 by residue)
QMean score : 0.402
(partial model without unconserved sides chains):
PDB file :
Tito_1DG9.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1DG9-query.scw
PDB file :
Tito_Scwrl_1DG9.pdb
: