Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNLLIMGLPGAGKGTQAAKIVEEFGVAHISTGDMFRAAMANQTEMGRLAKSYIDKGELVPDEVTNGIVKERLAEDDIAEKGFLLDGYPRTIEQAHALDATLEELGLRLDGVINIKVDPSCLIERLSGRIINRKTGETFHKVFNPP-----VDYKEEDYYQREDDKPETVKRRLDVNIAQGEPILEHYRKLGLVTDIEGNQEITEVFADVEKALLELK
3DKV Chain:A ((1-216))
MNIVLMGLPGAGKGTQAERIVEKYGIPHISTGDMFRAAMKEETPLGLEAKSYIDKGELVPDEVTIGIVRERLSKSD-CERGFLLDGFPRTVAQAEALEEILEEMGRPIDYVINIQVDKEELMERLTGRRICSVCGTTYHLVFNPPKTPGICDKDGGELYQRADDNEETVTKRLEVNMKQTAPLLAFYDSKEVLVNVNGQQDIQDVFADVKVILGGLK
General information:
TITO was launched using:
RESULT:
Template:
3DKV.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -74431 for 1660 contacts (-44.8/contact) +
2D Compatibility (PS) -23317 + (NN) -14030 + (LL) 204
1D Compatibility (HY) -22000 + (ID) 6150
Total energy: -139724.0 ( -84.17 by residue)
QMean score : 0.541
(partial model without unconserved sides chains):
PDB file :
Tito_3DKV.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3DKV-query.scw
PDB file :
Tito_Scwrl_3DKV.pdb
: