Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MRKEKTSQLVQLAIVTAISIVLGMFISIPTPTGFLTLLDAGIFFAAFYFGKKEGAVVGALAGFLIDLLKG-------YPNWMFFSLLIHGAQGYLAGLPGRRRLLGLISATLVMVLGYAIA------SGLMYGWGAVLPDIPGNIMQNMVGMVVGFALNKSLERVKK-
3P5N Chain:A ((10-188))
QQNKRLITISMLSAIAFVLTFIKFPIPFLPPYLTLDFSDVPSLLATFTFGPVAGIIVALVKNLLNYLFSMGDPVGPFANFLAGASFLLTAYAIYKNKRSTKSLITGLIIATIVMTIVLSILNYFVLLPLYGMKVIIVSGIIPFNIIKGIVISIVFILLYRRLANFLKR
General information:
TITO was launched using:
RESULT:
Template:
3P5N.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -98521 for 1129 contacts (-87.3/contact) +
2D Compatibility (PS) -15989 + (NN) -3958 + (LL) 0
1D Compatibility (HY) -12000 + (ID) 1700
Total energy: -132168.0 ( -117.07 by residue)
QMean score : 0.250
(partial model without unconserved sides chains):
PDB file :
Tito_3P5N.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3P5N-query.scw
PDB file :
Tito_Scwrl_3P5N.pdb
: