Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MTKLRRFRFPLRFYFTLMFVLTMLFSVLASLLLVAAIVFTFFQGVLTTHVLQVSALAVVFLSLVIASISMWYGSYHLTKPILDISRIVSNVADGDFEGHIYRNSNRRKSYEYYNELDELSESINQMIVSLSHMDHMRKDFITNVSHELKTPIAAVANIVELLQDPELDEETQSELLGLVKTESLRLTRLCDTMLQMSRVDNQETIGELSSVRVDEQIRQAMI---SLTERWQAKRINFQLDSKPYTVYSNSDLLMQVWINLLDNAIKYSDDIVDLRVRMEETNNHYLRVIISDKGRGISQYDVQHIFDKFYQADQSHNQQ--GNGLGLAIVKRIIVLCKGRISVSSQFEIGTEFCVELPLS |
4BIV Chain:A ((29-294)) | ------------------------------------------------------------------------------KPARKLKNAADEVAQGNLRQHPELEAGPQ-------EFLAAGASFNQMVTALERMMTSQQRLLSDISHELRTPLTRLQLGTALLRR----RSGESKELERIETEAQRLDSMINDLLVMSR--NQQKNALVSETIKANQLWSEVLDNAAFEAEQMGKSLTVNFPPGPWPLYGNPNALESALENIVRNALRYSHTKIEVGFAVDKDG---ITITVDDDGPGVSPEDREQIFRPFYRTDEARDRESGGTGLGLAIVETAIQQHRGWVKAEDSPLGGLRLVIWLPLY |
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General information:
TITO was launched using:
| RESULT:
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Template: 4BIV.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -79167 for 1906 contacts (-41.5/contact) +
2D Compatibility (PS) -27854 + (NN) -11758 + (LL) 9668
1D Compatibility (HY) -12800 + (ID) 3450
Total energy: -125361.0 ( -65.77 by residue)
QMean score : 0.354
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